11 human primary breast cancer tumors

GEO accession number: GSE75688

Sample info

57915 genes and 547 cells

11 integrated samples

TSNE PLOTS

TSNE plots showing clusters and celltypes

TSNE plot showing the gene counts - “TNFSF4_ENSG00000117586.6”

PCA PLOTS

PCA plots showing clusters and celltypes

2D PCA plot showing the gene counts - “TNFSF4_ENSG00000117586.6”

Number of cells from each cell type in the sample

Data filtered to only keep cells with more than 3 transcripts per cell down to all cells